A novel approach for the discrimination of culture medium from Vascular Endothelial Growth Factor (VEGF) overexpressing colorectal cancer cells
| dc.authorid | 0000-0002-8947-8646 | |
| dc.authorid | 0000-0002-5293-6447 | |
| dc.contributor.author | Tuncer, Sinem | |
| dc.contributor.author | Gurbanov, Rafig | |
| dc.date.accessioned | 2025-05-20T18:55:52Z | |
| dc.date.issued | 2020 | |
| dc.department | Bilecik Şeyh Edebali Üniversitesi | |
| dc.description.abstract | Objectives: The expression level of Vascular Endothelial Growth Factor (VEGF) is assumed as a prognostic marker for several tumor types, including colorectal cancer. Therefore, the determination of pre- and post-therapy levels of VEGF appears to have great value in the assessment of tumor prognosis. Enzyme-Linked Immunosorbent Assay (ELISA) is commonly used for the determination of serum or plasma VEGF levels, but the method is costly and time-consuming. In this study, we aimed to describe a rapid and cost-effective analysis method to discriminate VEGF overexpressing colorectal cancer-derived conditioned medium (CM). Methods: Attenuated Total Reflection (ATR)-Fourier Transform Infrared (FTIR) spectroscopy, combined with Principal Component Analysis (PCA) and Linear Discriminant Analysis (LDA), was used to differentiate VEGF over-expressing colorectal cancer cell line CM from CM obtained from the corresponding control cells which express and secrete relatively lower amount of VEGF. Results: Samples belong to VEGF over-expressing colorectal cancer cells were clearly distinguished from the control group with very high PC scores as PC1 + PC2 = 96%. Besides, a 100% accurate distinction between these two groups was achieved by the LDA analysis. Conclusions: ATR-FTIR spectroscopy combined with pattern recognition techniques was able to discriminate CM of VEGF overexpressing colorectal cancer cells with high efficiency and accuracy. | |
| dc.identifier.doi | 10.1515/tjb-2020-0058 | |
| dc.identifier.endpage | 724 | |
| dc.identifier.issn | 0250-4685 | |
| dc.identifier.issn | 1303-829X | |
| dc.identifier.issue | 6 | |
| dc.identifier.scopus | 2-s2.0-85098942506 | |
| dc.identifier.scopusquality | Q3 | |
| dc.identifier.startpage | 715 | |
| dc.identifier.trdizinid | 455164 | |
| dc.identifier.uri | https://doi.org/10.1515/tjb-2020-0058 | |
| dc.identifier.uri | https://search.trdizin.gov.tr/tr/yayin/detay/455164 | |
| dc.identifier.uri | https://hdl.handle.net/11552/7400 | |
| dc.identifier.volume | 45 | |
| dc.identifier.wos | WOS:000603517600012 | |
| dc.identifier.wosquality | Q4 | |
| dc.indekslendigikaynak | WoS | |
| dc.indekslendigikaynak | Scopus | |
| dc.indekslendigikaynak | TR-Dizin | |
| dc.indekslendigikaynak | WoS - Science Citation Index Expanded | |
| dc.language.iso | en | |
| dc.publisher | Walter De Gruyter Gmbh | |
| dc.relation.ispartof | Turkish Journal of Biochemistry-Turk Biyokimya Dergisi | |
| dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | |
| dc.rights | info:eu-repo/semantics/openAccess | |
| dc.snmz | KA_WOS_20250518 | |
| dc.subject | Attenuated Total Reflection (ATR)-Fourier Transform Infrared (FTIR) spectroscopy | |
| dc.subject | Linear Discriminant Analysis (LDA) | |
| dc.subject | pattern recognition | |
| dc.subject | Principal Component Analysis (PCA) | |
| dc.subject | Vascular Endothelial Growth Factor (VEGF) | |
| dc.subject | VEGF(165) | |
| dc.title | A novel approach for the discrimination of culture medium from Vascular Endothelial Growth Factor (VEGF) overexpressing colorectal cancer cells | |
| dc.type | Article |
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