A novel approach for the discrimination of culture medium from Vascular Endothelial Growth Factor (VEGF) overexpressing colorectal cancer cells

dc.authorid0000-0002-8947-8646
dc.authorid0000-0002-5293-6447
dc.contributor.authorTuncer, Sinem
dc.contributor.authorGurbanov, Rafig
dc.date.accessioned2025-05-20T18:55:52Z
dc.date.issued2020
dc.departmentBilecik Şeyh Edebali Üniversitesi
dc.description.abstractObjectives: The expression level of Vascular Endothelial Growth Factor (VEGF) is assumed as a prognostic marker for several tumor types, including colorectal cancer. Therefore, the determination of pre- and post-therapy levels of VEGF appears to have great value in the assessment of tumor prognosis. Enzyme-Linked Immunosorbent Assay (ELISA) is commonly used for the determination of serum or plasma VEGF levels, but the method is costly and time-consuming. In this study, we aimed to describe a rapid and cost-effective analysis method to discriminate VEGF overexpressing colorectal cancer-derived conditioned medium (CM). Methods: Attenuated Total Reflection (ATR)-Fourier Transform Infrared (FTIR) spectroscopy, combined with Principal Component Analysis (PCA) and Linear Discriminant Analysis (LDA), was used to differentiate VEGF over-expressing colorectal cancer cell line CM from CM obtained from the corresponding control cells which express and secrete relatively lower amount of VEGF. Results: Samples belong to VEGF over-expressing colorectal cancer cells were clearly distinguished from the control group with very high PC scores as PC1 + PC2 = 96%. Besides, a 100% accurate distinction between these two groups was achieved by the LDA analysis. Conclusions: ATR-FTIR spectroscopy combined with pattern recognition techniques was able to discriminate CM of VEGF overexpressing colorectal cancer cells with high efficiency and accuracy.
dc.identifier.doi10.1515/tjb-2020-0058
dc.identifier.endpage724
dc.identifier.issn0250-4685
dc.identifier.issn1303-829X
dc.identifier.issue6
dc.identifier.scopus2-s2.0-85098942506
dc.identifier.scopusqualityQ3
dc.identifier.startpage715
dc.identifier.trdizinid455164
dc.identifier.urihttps://doi.org/10.1515/tjb-2020-0058
dc.identifier.urihttps://search.trdizin.gov.tr/tr/yayin/detay/455164
dc.identifier.urihttps://hdl.handle.net/11552/7400
dc.identifier.volume45
dc.identifier.wosWOS:000603517600012
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWoS
dc.indekslendigikaynakScopus
dc.indekslendigikaynakTR-Dizin
dc.indekslendigikaynakWoS - Science Citation Index Expanded
dc.language.isoen
dc.publisherWalter De Gruyter Gmbh
dc.relation.ispartofTurkish Journal of Biochemistry-Turk Biyokimya Dergisi
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_WOS_20250518
dc.subjectAttenuated Total Reflection (ATR)-Fourier Transform Infrared (FTIR) spectroscopy
dc.subjectLinear Discriminant Analysis (LDA)
dc.subjectpattern recognition
dc.subjectPrincipal Component Analysis (PCA)
dc.subjectVascular Endothelial Growth Factor (VEGF)
dc.subjectVEGF(165)
dc.titleA novel approach for the discrimination of culture medium from Vascular Endothelial Growth Factor (VEGF) overexpressing colorectal cancer cells
dc.typeArticle

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